Group
Extension

Matches 5

Bio-Gonzales ( J/JW/JWB/Bio-Gonzales-0.090.tar.gz, JWB, 2025; MetaCPAN )
Bio-Gonzales/bin/iof.pl ( view source; MetaCPAN )
y %opt = ( quote => 1, sep => ' ' );
GetOptions( \%opt, 'sep|s=s', 'flat|flatten|f', 'quote|q!', 'json|j' ) or pod2usage(2);

gonzlog->tee_stderr(0);
gonzlog->namespace("gonzconf");
my @args = @ARGV;

    $res = $res->{$a};
  } else {
    die "could not access the structure: $a";
  }
}

if ( $opt{json} ) {
  print jfreeze $res;
} elsif ( $opt{flat} && ref $res eq 'ARRAY' ) {
  my $args;
  if ( $op
Bio-Gonzales ( J/JW/JWB/Bio-Gonzales-0.090.tar.gz, JWB, 2025; MetaCPAN )
Bio-Gonzales/lib/Bio/Gonzales/Util/Cerial.pm ( view source; MetaCPAN )
:JSON::XS;
use Data::Dumper;
use Storable qw/nstore_fd fd_retrieve/;

our $VERSION = '0.090'; # VERSION

our %EXPORT_TAGS = (
  'all' => [
    qw(
      ndjson_iterate ndjson_hash ndjson_slurp ndjson_
spew
      ndjson_freeze ndjson_thaw
      ythaw yfreeze yslurp yspew
      jthaw jfreeze jslurp jspew
      stoslurp stospew
    )
  ],
  std => [
    qw(
      ythaw yfreeze yslurp yspew
      jthaw

  *jthaw   = \&Cpanel::JSON::XS::decode_json;
}

our $JSON = Cpanel::JSON::XS->new->indent(1)->utf8->allow_nonref;

sub jfreeze {
  my $r;
  my @d = @_;
  try {
    $r = $JSON->encode(@d);
  } catch 
Bio-Gonzales ( J/JW/JWB/Bio-Gonzales-0.090.tar.gz, JWB, 2025; MetaCPAN )
Bio-Gonzales/bin/gonz_gosyn2dict.pl ( view source; MetaCPAN )
   "format" => hidden => {
      one_of => [ [ "json|j" => "output in json format" ], [ "yaml|y" => "output in yaml format" ], ],
      default => 'json'
    }
  ],
  [ 'alt_id',        'include alter
 unless ( $opt->syn );
    $go{$syn} = $t->acc;
  }
}
$errhandler->finish;

if ( $opt->format eq 'json' ) {
  jspew( \*STDOUT, \%go );
} elsif ( $opt->format eq 'yaml' ) {
  yspew( \*STDOUT, \%go );
}
Bio-Gonzales ( J/JW/JWB/Bio-Gonzales-0.090.tar.gz, JWB, 2025; MetaCPAN )
Bio-Gonzales/lib/Bio/Gonzales/SummarizedExperiment.pm ( view source; MetaCPAN )
se Algorithm::Loops qw/MapCarU/;

use Bio::Gonzales::Matrix::Util;

use Data::Dumper;
use Cpanel::JSON::XS;

use Clone;

# Imports hier

use Moo;
use namespace::clean;

our $VERSION  = 0.01_01;
our $N

}

sub encode_as_json {
  my $self = shift;
  my $js   = Cpanel::JSON::XS->new->utf8->allow_nonref->indent(1);    #->canonical(1);
  return $js->encode( $self->as_hash );
}

sub json_spew {
  my ( $s
f ) = @_;
  open my $fh, '>', $f or die "Can't open filehandle: $!";
  print $fh $self->encode_as_json;
  close $fh;
}

sub subset {
  my ( $self, $cb ) = @_;

  my $assay          = $self->assay;
  m
Bio-Gonzales ( J/JW/JWB/Bio-Gonzales-0.090.tar.gz, JWB, 2025; MetaCPAN )
Bio-Gonzales/bin/gonz_gorel2dict.pl ( view source; MetaCPAN )
   "format" => hidden => {
      one_of => [ [ "json|j" => "output in json format" ], [ "yaml|y" => "output in yaml format" ], ],
      default => 'json'
    }
  ],
  [
    "relation" => hidden => {
 
ess ( $opt->syn );
    $go{$syn} = \@rel_terms;
  }
}
$errhandler->finish;

if ( $opt->format eq 'json' ) {
  jspew( \*STDOUT, \%go );
} elsif ( $opt->format eq 'yaml' ) {
  yspew( \*STDOUT, \%go );
}

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Maintained by Kenichi Ishigaki <ishigaki@cpan.org>. If you find anything, submit it on GitHub.