CPAN::Groonga

dx_item->[0] -> $result_prefix");

      jspew( $result_prefix . ".env.json",  \%ENV );
      jspew( $result_prefix . ".item.json", $idx_item );
      sleep 1;

      return 1;
    },
    post_task =>

st like index, prints element(s) to <result_prefix>.item.json.
Additionally, the current environment will be stored in <result_prefix>.env.json.

EXAMPLE CONFIG:
  ---
  input:
  - elements:
    - a
 

package Bio::Grid::Run::SGE::Index::NDJSON;

use warnings;
use strict;

use Mouse;

use IO::Handle;
use Carp;
use List::Util qw/sum/;
use List::MoreUtils qw/uniq/;
use Bio::Gonzales::Util::File qw/ope

s_newer/;
use Bio::Grid::Run::SGE::Util qw/glob_list/;
use Data::Dumper;
use Cwd qw/fastcwd/;
use JSON::XS;

our $VERSION = '0.066'; # VERSION

has 'num_elems_cumulative' => ( is => 'rw' );
has overwr

$read_length;

  return {
    file => $idx->[$cur_file_idx]{file},
    elements => [ map { decode_json($_) } split(/\n/, $data) ]
  };
}

sub num_elem {
  my ($self) = @_;

  my $num_elems = 0;

  #su

rson-in-charge@jabber.example.com
      script: /path/to/log/script.pl

Custom scripts will get a json encoded structure passed via stdin. The structure has the form:


    {
      "subject": "the sub

et.wur.nl',
  'job_name'      => 'xml_munge1',
  'extra'         => { 'map' => '../split_test.map.json.gz' },
  'mail'          => 'joachim.bargsten@wur.nl',
  'script_dir'    => '/WORKING_DIR/bin',
 

idx_item->[0] -> $result_prefix");
      jspew( $result_prefix . ".env.json",  \%ENV );
      jspew( $result_prefix . ".item.json", $idx_item );
      sleep 1;
      die;

    },
    post_task => sub 

st like index, prints element(s) to <result_prefix>.item.json.
Additionally, the current environment will be stored in <result_prefix>.env.json.

EXAMPLE CONFIG:
  ---
  input:
  - elements:
    - a
 

_dir}, $name );
  }

  $env->{worker_config_file} = catfile( $config->{tmp_dir}, $jn . '.job.conf.json' );
  $env->{worker_env_script} = catfile( $config->{tmp_dir}, join( '.', 'env', $jn, 'pl' ) );
}

package Bio::Grid::Run::SGE::Index::FileRecordsFromNDJSON;

use warnings;
use strict;

use Mouse;

use IO::Handle;
use Carp;
use List::Util qw/sum/;
use List::MoreUtils qw/uniq/;
use Bio::Gonzales::Ut

s_newer/;
use Bio::Grid::Run::SGE::Util qw/glob_list/;
use Data::Dumper;
use Cwd qw/fastcwd/;
use JSON::XS;

our $VERSION = '0.066'; # VERSION

has 'num_elems_cumulative' => ( is => 'rw' );
has overwr

teable );
  my $files_key = $self->files_key;

  my $abs_jsonl_files = glob_list($input_files);

  my @abs_input_files;
  for my $f (@$abs_jsonl_files) {
    open my $fh, '<', $f or die "Can't open fi

ec::Functions qw/catfile/;
use Data::Dumper;
use List::Util qw/min/;
use Path::Tiny;
use JSON::XS qw/encode_json/;
use Bio::Gonzales::Util::Log;

use base 'Exporter';
our ( @EXPORT, @EXPORT_OK, %EXPOR

idx_item->[0] -> $result_prefix");
      jspew( $result_prefix . ".env.json",  \%ENV );
      jspew( $result_prefix . ".item.json", $idx_item );
      sleep 1;
      function_that_does_not_exist();

 

st like index, prints element(s) to <result_prefix>.item.json.
Additionally, the current environment will be stored in <result_prefix>.env.json.

EXAMPLE CONFIG:
  ---
  input:
  - elements:
    - a