Batch-mode switch [default: no]. When specified, parameters are restored from
the user-specified JSON file. This option takes precedence on any command-line
specified option, such as C<--max-hits>, C
ams
Batch-mode switch [default: no]. When specified, parameters are restored from
the last saved JSON file for each report. This option takes precedence over
all other command-line options.
=item --
t_arg => undef,
lazy => 1,
builder => '_build_' . $_ . '_file',
) for qw(idl fas tax json list);
has $_ . '_parameter_file' => (
is => 'ro',
isa => 'Bio::MUST::Core::T
ix( shift->new_parameter_file, '.list' ) );
} # TODO: choose better suffix: .text?
sub _build_json_file {
return shift->new_parameter_file;
}
sub _build_new_parameter_file {
my $self = sh
$filename = $self->last_parameter_file;
my ($basename, $dir, $suf) = fileparse( $filename, '.json' );
($basename, $dir, $suf) = fileparse( $self->file, qr{ \.[^.]* }xms )
unless
mments '###';
use MooseX::SemiAffordanceAccessor;
use MooseX::Storage;
with Storage('format' => 'JSON', 'io' => 'File');
has bb_file => (
traits => ['DoNotSerialize'],
is => 'ro',