Group
Extension

Matches 3

Bio-MUST-Apps-OmpaPa ( D/DB/DBAURAIN/Bio-MUST-Apps-OmpaPa-0.252040.tar.gz, DBAURAIN, 2025; MetaCPAN )
Bio-MUST-Apps-OmpaPa/bin/ompa-pa.pl ( view source; MetaCPAN )

Batch-mode switch [default: no]. When specified, parameters are restored from
the user-specified JSON file. This option takes precedence on any command-line
specified option, such as C<--max-hits>, C
ams

Batch-mode switch [default: no]. When specified, parameters are restored from
the last saved JSON file for each report. This option takes precedence over
all other command-line options.

=item --
Bio-MUST-Apps-OmpaPa ( D/DB/DBAURAIN/Bio-MUST-Apps-OmpaPa-0.252040.tar.gz, DBAURAIN, 2025; MetaCPAN )
Bio-MUST-Apps-OmpaPa/lib/Bio/MUST/Apps/OmpaPa/Roles/Parsable.pm ( view source; MetaCPAN )
t_arg => undef,
    lazy     => 1,
    builder  => '_build_' . $_ . '_file',
) for qw(idl fas tax json list);

has $_ . '_parameter_file' => (
    is       => 'ro',
    isa      => 'Bio::MUST::Core::T
ix( shift->new_parameter_file, '.list'  ) );
}   # TODO: choose better suffix: .text?

sub _build_json_file {
    return shift->new_parameter_file;
}

sub _build_new_parameter_file {
    my $self = sh
 $filename = $self->last_parameter_file;
    my ($basename, $dir, $suf) = fileparse( $filename, '.json' );
       ($basename, $dir, $suf) = fileparse( $self->file, qr{ \.[^.]* }xms )
           unless
Bio-MUST-Apps-OmpaPa ( D/DB/DBAURAIN/Bio-MUST-Apps-OmpaPa-0.252040.tar.gz, DBAURAIN, 2025; MetaCPAN )
Bio-MUST-Apps-OmpaPa/lib/Bio/MUST/Apps/OmpaPa/Parameters.pm ( view source; MetaCPAN )
mments '###';

use MooseX::SemiAffordanceAccessor;
use MooseX::Storage;
with Storage('format' => 'JSON', 'io' => 'File');

has bb_file => (
    traits   => ['DoNotSerialize'],
    is      => 'ro',
   

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Maintained by Kenichi Ishigaki <ishigaki@cpan.org>. If you find anything, submit it on GitHub.