CPAN::Groonga

package HPC::Runner::Command::Logger::JSON;

use MooseX::App::Role;
use MooseX::Types::Path::Tiny qw/File Path Paths AbsPath AbsFile/;
use File::Spec;
use Data::UUID;
use DateTime;
use File::Path qw(m

ake_path remove_tree);
use HPC::Runner::Command::Logger::JSON::Archive;

with 'BioSAILs::Utils::Files::CacheDir';

option 'data_dir' => (
    is            => 'rw',
    isa           => AbsPath,
    l

PC::Runner::Command::execute_job::Logger::JSON;

use Moose::Role;
use namespace::autoclean;

with 'HPC::Runner::Command::execute_job::Logger::Lock';

use JSON;
use File::Spec;
use DateTime;
use Try::T

;
use File::Path qw(make_path remove_tree);
use File::Slurp;
use Cwd;
use Time::HiRes;

has 'task_json' => (
    is       => 'rw',
    isa      => 'Str',
    default  => '',
    required => 0,
);

has

 my $self = shift;

    my $job_meta = {};
    if ( $self->metastr ) {
        $job_meta = decode_json( $self->metastr );
    }

    if ( !$job_meta || !exists $job_meta->{jobname} ) {
        ##TO ac

:Runner::Command::stats::Logger::JSON::Summary::JSONOutput;

use Moose::Role;
use namespace::autoclean;
use JSON;

with 'HPC::Runner::Command::stats::Logger::JSON::JSONOutput';

sub iter_jobs_summary 

n_id}->{jobs}->{$jobname} = $summary;

        $self->task_data( {} );
    }

    push( @{ $self->json_data }, $submission_obj );
}

sub gen_job_tasks_summary {
    my $self    = shift;
    my $jobnam

package HPC::Runner::Command::stats::Logger::JSON::TableOutput;

use Moose::Role;
use namespace::autoclean;

use Text::ASCIITable;

## TODO This one is mostly the same
sub build_table {
    my $self =

ge HPC::Runner::Command::stats::Logger::JSON::Summary::TableOutput;

use Moose::Role;
use namespace::autoclean;

with 'HPC::Runner::Command::stats::Logger::JSON::TableOutput';

sub iter_jobs_summary {

package HPC::Runner::Command::stats::Logger::JSON::JSONOutput;

use Moose::Role;
use namespace::autoclean;
use JSON;

has 'json_data' => (
    is      => 'rw',
    isa     => 'ArrayRef',
    default =

> sub { return [] }
);

after 'iter_submissions' => sub {
    my $self = shift;
    my $json = encode_json( $self->json_data );
    print $json;
    print "\n";
};

1;

ckage HPC::Runner::Command::stats::Logger::JSON::Utils;

use Moose::Role;
use namespace::autoclean;

use JSON;
use Try::Tiny;
use File::Slurp;

sub read_json_files {
    my $self          = shift;
   

shift;

    my @json_files =
      glob( File::Spec->catdir( $self->data_dir, $jobname, '*json' ) );

    my $running = {};
    foreach my $file (@json_files) {
        my $running_json = read_file($f

ile);
        my $trun         = decode_json($running_json);
        foreach my $key ( keys %{$trun} ) {
            $running->{$key} = $trun->{$key};
        }
    }

    return $running;
}

1;

e HPC::Runner::Command::stats::Logger::JSON::Long;

use Moose::Role;
use namespace::autoclean;

with 'HPC::Runner::Command::stats::Logger::JSON::Utils';

use JSON;
use File::Glob;
use File::Slurp;

su

ift;
    my $submission_id = shift;
    my $jobname       = shift;

    my $running = $self->read_json_files($submission_id, $jobname);

    my $total_tasks = [];
    foreach ( sort { $a <=> $b } keys

ner::Command::stats::Logger::JSON::Long::TableOutput;

use Moose::Role;
use namespace::autoclean;

with 'HPC::Runner::Command::stats::Logger::JSON::TableOutput';

use JSON;
use Text::ASCIITable;

sub 

PC::Runner::Command::submit_jobs::Logger::JSON;

use Moose::Role;
use namespace::autoclean;

with 'HPC::Runner::Command::execute_job::Logger::Lock';

use JSON;
use File::Spec;
use Data::UUID;
use File

lurp;
use DateTime;
use Capture::Tiny ':all';

=head3 create_json_submission

Create the data for the json submission

=cut

sub create_json_submission {
    my $self = shift;

    make_path($self->da

_meta;

    # my $json_text = encode_json $hpc_meta;
    # write_file(File::Spec->catdir($self->data_dir, 'submission.json'), $json_text);

    return $hpc_meta;
}

=head3 update_json_submission

Take

package HPC::Runner::Command::Logger::JSON::Archive;

use Moose;
use MooseX::NonMoose;

use File::Spec;
use File::Slurp;
use Try::Tiny;
use Path::Tiny;
use Data::Dumper;
use Capture::Tiny ':all';
use 

HPC::Runner::Command::stats::Logger::JSON::Summary;

use Moose::Role;
use namespace::autoclean;

with 'HPC::Runner::Command::stats::Logger::JSON::Utils';

use JSON;
use Try::Tiny;
use File::Slurp;

##

shift;
    my $submission_id = shift;
    my $jobname       = shift;

    my $tasks = $self->read_json_files( $submission_id, $jobname );
    my $running =
      $self->count_running_tasks( $submissio

JSON::Long::JSONOutput;

use Moose::Role;
use namespace::autoclean;
use JSON;

with 'HPC::Runner::Command::stats::Logger::JSON::Summary';
with 'HPC::Runner::Command::stats::Logger::JSON::Summary::JSON

$submission_id, $jobname );
        $submission_obj->{$submission_id}->{jobs}->{$jobname}->{tasks_running}
          = $running;

        push( @{ $self->json_data }, $submission_obj );

    }

}

1;

no_log_json' => (
    traits        => ['Bool'],
    is            => 'rw',
    isa           => 'Bool',
    default       => 0,
    documentation => 'Opt out of writing the tar archive of JSON stats.

 HPC::Runner::Command::submit_jobs::Utils::Scheduler::JobStats;

#use Moose::Role;
use Moose;
use JSON;
use List::MoreUtils 0.428 qw(firstidx);

=head1 HPC::Runner::Command::submit_jobs::Utils::Schedu

  my $json      = JSON->new->allow_nonref;
    my $json_text = $json->encode($batch);

    # $batch->{meta_str} = $json_text;
    # delete $batch->{meta_str};
    $json_text = "--metastr \'$json_text\

'";
    return $json_text;
}

=head3 collect_stats

Collect job stats

=cut

sub collect_stats {
    my $self          = shift;
    my $batch_counter = shift;
    my $cmd_counter   = shift;
    my $cu

  $self->log_table( $cmdpid, $exitcode, $format->format_duration($duration) );

    $self->update_json_task;

    return $exitcode;
}

=head3 name_log

Default is dt, jobname, counter

=cut

#TODO mov

h->autoflush();

    # Start Command Log
    $self->start_command_log($cmdpid);
    $self->create_json_task($cmdpid);

    ##IF we have an exitcode the job failed with a command not found
    return (

st;
        }
    }
    if ( $x >= $max_retries ) {
        $self->{$self->logger}->warn('Logger::JSON Error: We exited the lock!');
    }

    return $ret;
}

sub write_lock {
    my $self = shift;

>lock_file->touchpath;
    }
    catch {
        $self->{$self->logger}->warn(
            'Logger::JSON Error: We were not able to write '
              . $self->lock_file->stringify );
    };
}

1;

,
);

=head3 process_table

We also want to write all cmds and exit codes to a table

#TODO add a json format also

=cut

option 'process_table' => (
    isa     => Path,
    is      => 'rw',
    lazy

b {
        my $self = shift;
        $self->process_table->touchpath;
    },
);

=head3 metastr

JSON string passed from HPC::Runner::App::Scheduler. It describes the total number of jobs, processes,

'HPC::Runner::Command::execute_job::Utils::Log';
with 'HPC::Runner::Command::execute_job::Logger::JSON';

use Sys::Hostname;
use Archive::Tar;

=head2 Command Line Options

=cut


=head2 Internal Attr

nd::Logger::JSON';
with 'HPC::Runner::Command::stats::Logger::JSON::Summary';
with 'HPC::Runner::Command::stats::Logger::JSON::Long';
with 'HPC::Runner::Command::Logger::Loggers';

use JSON;
use File:

cmd_aliases => ['l'],
);

option 'json' => (
    is            => 'rw',
    isa           => 'Bool',
    default       => 0,
    documentation => 'Output data in json instead of a table. '
      . 'Th

=> 'Str',
    default       => 'JSON',
    documentation => 'hpcrunner.pl stats JSON/Sqlite/Elasticsearch .',
);

sub BUILD {
    my $self = shift;

    if ( $self->json && $self->summary ) {