CPAN::Groonga

odos')
	->code_is(200)
	->json_cmp([]);

$t->request(GET '/todos/1')
	->code_is(404);

$t->request(
	PUT '/todos',
	Content_Type => 'application/json',
	Content => $app->json->encode({name => 't1', co

ntent => 't1 content'})
	)
	->code_is(200)
	->json_cmp({id => 1});

$t->request(
	PUT '/todos',
	Content_Type => 'application/json',
	Content => $app->json->encode({name => 't2', content => 't2 conten

)
	->json_cmp({id => 2});

$t->request(GET '/todos/1')
	->code_is(200)
	->json_cmp({name => 't1', content => 't1 content', date => ignore()});

$t->request(GET '/todos/2')
	->code_is(200)
	->json_cmp(

use strict;
use warnings;
use Perlgram;
use Perlgram::Update;
use Carp qw(croak);
use JSON qw(decode_json);

sub new {
    my ($class, %args) = @_;
    my $self = {
        bot      => $args

          exists $_->{excluded}
                    ? delete $_->{excluded}
                    : JSON::PP::false
                ),

                # _notes => $_->{notes}
            }
        } @{

ngs;
use autodie;

#use Carp    qw(confess);
use feature qw(say);
use utf8;
use Data::Dumper;
use JSON::XS;
use Time::HiRes  qw(gettimeofday);
use POSIX        qw(strftime);
use Scalar::Util qw(looks_

(shift);
    return
        ( $val eq 'true'  || $val eq 'yes' ) ? JSON::XS::true
      : ( $val eq 'false' || $val eq 'no' )  ? JSON::XS::false
      :                                        undef;  

##########
use Convert::Pheno;

# Define method
my $method = 'pxf2bff';

# Define data
my $my_pxf_json_data = {
    "phenopacket" => {
        "id"      => "P0007500",
        "subject" => {
         

}
    }
  } ;

# Create object
my $convert = Convert::Pheno->new(
    {
        data   => $my_pxf_json_data,
        method => $method
    }
);

# Run method and store result in hashref
my $hashref = 

 are usually split in files:
  # - phenopacket.json ( usually - 1 individual per file)
  # - cohort.json (info on mutliple individuals)
  # - family.json (info related to one or multiple individuals).

the root level (/).
  #
  # However, top-elements might be combined into a single file (e.g., pxf.json),
  # as a result, certain files may contain objects for top-level elements:
  # - /phenopacket
 

e = shift;
    print Dumper $value;
    return JSON::XS::true
      if $value && $value ne 'false';    # Non-empty string and not 'false'
    return JSON::XS::false;              # Empty, 'false', or 

 {

        my $obs;

        next
          if ( $feature->{excluded} && $feature->{excluded} == JSON::PP::true );

        $obs->{observation_id} = ++$OBSERVATION_ID_COUNT;

        # e.g., $feature

onfig->{token}) {
            return $c->render(json => { error => 'Invalid token' }, status => 403);
        }

        my $update = $c->req->json;
        if ($update) {
            my $handle

iled: $@");
                return $c->render(json => { error => 'Internal error' }, status => 500);
            }
        }

        $c->render(json => { ok => 1 });
    });
}

1;
__END__

e warnings;
use autodie;
use feature qw(say);
use Moo;
use File::Spec::Functions qw(catfile);
use JSON::Validator;
use Term::ANSIColor qw(:constants);
use Convert::Pheno::IO::FileIO;

# Declate attrib

er an object is created
sub BUILD {

    my $self = shift;
    $self->{schema} =
      io_yaml_or_json( { filepath => $self->{schema_file}, mode => 'read' } )
      ;    # setter
}

##################

##############
#  SCHEMA VALIDATION    #
#########################
#########################

sub json_validate {

    my $self   = shift;
    my $data   = $self->{data};
    my $schema = $self->{sche

Convert::Pheno::Utils::Mapping;
use Convert::Pheno::CSV;
use Convert::Pheno::RDF qw(do_bff2jsonld do_pxf2jsonld);
use Convert::Pheno::OMOP;
use Convert::Pheno::PXF;
use Convert::Pheno::Bff2Pxf;
use Co

CDISC;
use Convert::Pheno::REDCap;

use Exporter 'import';
our @EXPORT =
  qw($VERSION io_yaml_or_json omop2bff_stream_processing share_dir);    # Symbols imported by default

#our @EXPORT_OK = qw(foo

#####
#############

sub bff2pxf {
    my $self = shift;

    # <array_dispatcher> will deal with JSON arrays
    return $self->array_dispatcher;
}

#############
#############
#  BFF2CSV  #
#########

ing;

use strict;
use warnings;
use autodie;
use feature qw(say);
use utf8;
use Data::Dumper;
use JSON::XS;
use Time::HiRes qw(gettimeofday);
use POSIX       qw(strftime);
use DateTime::Format::ISO860

(shift);
    return
        ( $val eq 'true'  || $val eq 'yes' ) ? JSON::XS::true
      : ( $val eq 'false' || $val eq 'no' )  ? JSON::XS::false
      :                                        undef;  

n = 'JSON::PP';    # use JSON::PP::Boolean objects
use JSON::XS;
use Sort::Naturally qw(nsort);
use Data::Leaf::Walker;
use Exporter 'import';
our @EXPORT = qw(read_json read_yaml io_yaml_or_json writ

  #
#########################
#########################

sub read_json {

    my $str = path(shift)->slurp_utf8;
    return decode_json($str);    # Decode to Perl data structure
}

sub read_yaml {

  

_or_json {

    my $arg  = shift;
    my $file = $arg->{filepath};
    my $mode = $arg->{mode};
    my $data = $mode eq 'write' ? $arg->{data} : undef;

    # Checking only for qw(.yaml .yml .json)
  

# from cpan
use JSON::RPC2::TwoWay 0.07;
# JSON::RPC2::TwoWay depends on JSON::MaybeXS anyways, so it can be used here
# without adding another dependency
use JSON::MaybeXS qw(JSON);
use MojoX::Nets

e JobCenter::Client::Mojo::Steps;

has [qw(
	actions address auth clientid conn debug ioloop jobs json
	lastping log method ns ping_timeout port rpc timeout tls token who
)];

# keep in sync with the 

args{debug} // 0; # or 1?
	$self->{ioloop} = $args{ioloop} // Mojo::IOLoop->singleton;
	my $json = $args{json} // 1;
	my $log = $args{log} // Mojo::Log->new(level => ($debug) ? 'debug' : 'info');
	my 

use 5.036;
use strict;
use warnings;
use experimental 'builtin';

package Types::JSONSchema::PrimativeTypes;

our $AUTHORITY = 'cpan:TOBYINK';
our $VERSION   = '0.001000';

use Type::Library
	-base,
	

 Type::Utils;

declare JNull,
	as Undef;

declare JBoolean,
	as InstanceOf[ 'boolean', 'JSON::PP::Boolean', 'JSON::XS::Boolean' ]
	| ScalarRef[ Enum[ 0, 1 ] ]
	| Value->create_child_type(
		name      

rimativeType,
	as InstanceOf->of('Type::Tiny')->with_attribute_values(
		library => Enum[ 'Types::JSONSchema::PrimativeTypes' ],
		name    => Enum[ sort map $_->name, values %primative_name_to_type ],

package Types::JSONSchema;

our $AUTHORITY = 'cpan:TOBYINK';
our $VERSION   = '0.001000';

use constant { true => !!1, false => !!0 };

use Type::Library
	-extends => [ 'Types::JSONSchema::Primative

		FmtUri
		FmtUriReference
		FmtIri
		FmtIriReference
		FmtUuid
		FmtUriTemplate
		FmtJsonPointer
		FmtRelativeJsonPointer
		FmtRegex
	/;
use Types::Common -all;
use Types::Standard::ArrayRef Strings 

ur @EXPORT_OK, qw(
	json_eq
	json_safe_dumper
	jpointer_escape
	schema_to_type
	true
	false
);

signature_for json_eq => (
	method  => false,
	pos     => [ Any, Any ],
);

sub json_eq ( $x, $y ) {
	
	

ile
    my $data_mapping_file =
      io_yaml_or_json( { filepath => $arg->{mapping_file}, mode => 'read' } );

    # Validate mapping file against JSON schema
    my $jv = Convert::Pheno::Utils::Sche

>{self_validate_schema},
            schema_file => $arg->{schema_file}
        }
    );
    $jv->json_validate;

    # Remap for quick looukup
    remap_assignTermIdFromHeader($data_mapping_file);

 

self, $data );

    # Return JSON string
    #  - canonical has some overhead but needed for t/)
    #  - $fh is already utf-8, no need to encode again here
    return JSON::XS->new->canonical->encode

e warnings;
use autodie;
use feature qw(say);
use Moo;
use File::Spec::Functions qw(catfile);
use JSON::Validator;
use Term::ANSIColor qw(:constants);
use Convert::Pheno::IO::FileIO;

# Declate attrib

ter an object is created
sub BUILD {
    my $self = shift;
    $self->{schema} =
      io_yaml_or_json( { filepath => $self->{schema_file}, mode => 'read' } )
      ;    # setter
}

##################

##############
#  SCHEMA VALIDATION    #
#########################
#########################

sub json_validate {
    my $self   = shift;
    my $data   = $self->{data};
    my $schema = $self->{schem

n = 'JSON::PP';    # use JSON::PP::Boolean objects
use JSON::XS;
use Sort::Naturally qw(nsort);
use Data::Leaf::Walker;
use Exporter 'import';
our @EXPORT = qw(read_json read_yaml io_yaml_or_json writ

  #
#########################
#########################

sub read_json {
    my $str = path(shift)->slurp_utf8;
    return decode_json($str);    # Decode to Perl data structure
}

sub read_yaml {
    

      ;    # revert floatings getting stringified by YAML::XS
    return $data;
}

sub io_yaml_or_json {
    my $arg  = shift;
    my $file = $arg->{filepath};
    my $mode = $arg->{mode};
    my $dat

? JSON::XS::false : JSON::XS::true;
            $is_boolean++;
        }

        # ANy other string is excluded = 0 (i.e., included)
        else {
            $phenotypicFeature->{excluded} = JSON::

package Perlgram;
use strict;
use warnings;
use HTTP::Tiny;
use JSON qw(encode_json decode_json);
use URI::Escape;
use Log::Log4perl qw(:easy);
use Perlgram::Error;

our $VERSION = '0.03';
o

     } 
            # For POST methods
            else {
                my $content = encode_json($params);
                #print "DEBUG: POST Content: $content\n";  # Debug POST data
        

$url,
                    {
                        headers => { 'Content-Type' => 'application/json' },
                        content => $content
                    }
                );