Metabolomics-Fragment-Annotation/lib/PeakForest/REST_Client/ChromatographyApi.pm
=begin comment
PeakForest REST API
API specification to support \"PeakForest - REST API\" operations
The version of the OpenAPI document: 2.3.4
Contact: contact@peakforest.org
Generated by: https://openapi-generator.tech
=end comment
=cut
#
# NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
# Do not edit the class manually.
# Ref: https://openapi-generator.tech
#
package PeakForest::REST_Client::ChromatographyApi;
require 5.6.0;
use strict;
use warnings;
use utf8;
use Exporter;
use Carp qw( croak );
use Log::Any qw($log);
use PeakForest::REST_Client::ApiClient;
use base "Class::Data::Inheritable";
our $VERSION = '2.3.0';
__PACKAGE__->mk_classdata('method_documentation' => {});
sub new {
my $class = shift;
my $api_client;
if ($_[0] && ref $_[0] && ref $_[0] eq 'PeakForest::REST_Client::ApiClient' ) {
$api_client = $_[0];
} else {
$api_client = PeakForest::REST_Client::ApiClient->new(@_);
}
bless { api_client => $api_client }, $class;
}
#
# get_chromatographies
#
# Get / search chromatography data
#
# @param string $spectra_type the mandatory spectra type (required)
# @param string $column_name the optional column name (optional)
# @param string $column_constructor the optional column constructor (optional)
# @param string $mode the optional chromatography mode (optional)
# @param double $column_length the optional column length, in 'mm' (optional)
# @param double $column_diameter the optional column diameter, in 'mm' (optional)
# @param double $column_particule_size the optional column particule size, in 'µm' (optional)
# @param double $flow_rate the optional separation flow rate, in 'µL/min' (optional)
# @param int $offset The number of items to skip before starting to collect the result set. (optional, default to 0)
# @param int $limit The numbers of items to return. (optional, default to 20)
{
my $params = {
'spectra_type' => {
data_type => 'string',
description => 'the mandatory spectra type',
required => '1',
},
'column_name' => {
data_type => 'string',
description => 'the optional column name',
required => '0',
},
'column_constructor' => {
data_type => 'string',
description => 'the optional column constructor',
required => '0',
},
'mode' => {
data_type => 'string',
description => 'the optional chromatography mode',
required => '0',
},
'column_length' => {
data_type => 'double',
description => 'the optional column length, in 'mm'',
required => '0',
},
'column_diameter' => {
data_type => 'double',
description => 'the optional column diameter, in 'mm'',
required => '0',
},
'column_particule_size' => {
data_type => 'double',
description => 'the optional column particule size, in 'µm'',
required => '0',
},
'flow_rate' => {
data_type => 'double',
description => 'the optional separation flow rate, in 'µL/min'',
required => '0',
},
'offset' => {
data_type => 'int',
description => 'The number of items to skip before starting to collect the result set.',
required => '0',
},
'limit' => {
data_type => 'int',
description => 'The numbers of items to return.',
required => '0',
},
};
__PACKAGE__->method_documentation->{ 'get_chromatographies' } = {
summary => 'Get / search chromatography data',
params => $params,
returns => 'ARRAY[Chromatography]',
};
}
# @return ARRAY[Chromatography]
#
sub get_chromatographies {
my ($self, %args) = @_;
# verify the required parameter 'spectra_type' is set
unless (exists $args{'spectra_type'}) {
croak("Missing the required parameter 'spectra_type' when calling get_chromatographies");
}
# parse inputs
my $_resource_path = '/spectra/{spectraType}/chromatographies';
my $_method = 'GET';
my $query_params = {};
my $header_params = {};
my $form_params = {};
# 'Accept' and 'Content-Type' header
my $_header_accept = $self->{api_client}->select_header_accept('application/json');
if ($_header_accept) {
$header_params->{'Accept'} = $_header_accept;
}
$header_params->{'Content-Type'} = $self->{api_client}->select_header_content_type();
# query params
if ( exists $args{'column_name'}) {
$query_params->{'column_name'} = $self->{api_client}->to_query_value($args{'column_name'});
}
# query params
if ( exists $args{'column_constructor'}) {
$query_params->{'column_constructor'} = $self->{api_client}->to_query_value($args{'column_constructor'});
}
# query params
if ( exists $args{'mode'}) {
$query_params->{'mode'} = $self->{api_client}->to_query_value($args{'mode'});
}
# query params
if ( exists $args{'column_length'}) {
$query_params->{'column_length'} = $self->{api_client}->to_query_value($args{'column_length'});
}
# query params
if ( exists $args{'column_diameter'}) {
$query_params->{'column_diameter'} = $self->{api_client}->to_query_value($args{'column_diameter'});
}
# query params
if ( exists $args{'column_particule_size'}) {
$query_params->{'column_particule_size'} = $self->{api_client}->to_query_value($args{'column_particule_size'});
}
# query params
if ( exists $args{'flow_rate'}) {
$query_params->{'flow_rate'} = $self->{api_client}->to_query_value($args{'flow_rate'});
}
# query params
if ( exists $args{'offset'}) {
$query_params->{'offset'} = $self->{api_client}->to_query_value($args{'offset'});
}
# query params
if ( exists $args{'limit'}) {
$query_params->{'limit'} = $self->{api_client}->to_query_value($args{'limit'});
}
# path params
if ( exists $args{'spectra_type'}) {
my $_base_variable = "{" . "spectraType" . "}";
my $_base_value = $self->{api_client}->to_path_value($args{'spectra_type'});
$_resource_path =~ s/$_base_variable/$_base_value/g;
}
my $_body_data;
# authentication setting, if any
my $auth_settings = [qw(ApiKeyToken ApiKeyAuth )];
# make the API Call
my $response = $self->{api_client}->call_api($_resource_path, $_method,
$query_params, $form_params,
$header_params, $_body_data, $auth_settings);
if (!$response) {
return;
}
my $_response_object = $self->{api_client}->deserialize('ARRAY[Chromatography]', $response);
return $_response_object;
}
#
# get_chromatographies_properties
#
# Get / search chromatographies, extract queried properties.
#
# @param string $spectra_type the mandatory spectra type (required)
# @param ARRAY[string] $properties (required)
# @param string $column_name the optional column name (optional)
# @param string $column_constructor the optional column constructor (optional)
# @param string $mode the optional chromatography mode (optional)
# @param double $column_length the optional column length, in 'mm' (optional)
# @param double $column_diameter the optional column diameter, in 'mm' (optional)
# @param double $column_particule_size the optional column particule size, in 'µm' (optional)
# @param double $flow_rate the optional separation flow rate, in 'µL/min' (optional)
# @param int $offset The number of items to skip before starting to collect the result set. (optional, default to 0)
# @param int $limit The numbers of items to return. (optional, default to 20)
{
my $params = {
'spectra_type' => {
data_type => 'string',
description => 'the mandatory spectra type',
required => '1',
},
'properties' => {
data_type => 'ARRAY[string]',
description => '',
required => '1',
},
'column_name' => {
data_type => 'string',
description => 'the optional column name',
required => '0',
},
'column_constructor' => {
data_type => 'string',
description => 'the optional column constructor',
required => '0',
},
'mode' => {
data_type => 'string',
description => 'the optional chromatography mode',
required => '0',
},
'column_length' => {
data_type => 'double',
description => 'the optional column length, in 'mm'',
required => '0',
},
'column_diameter' => {
data_type => 'double',
description => 'the optional column diameter, in 'mm'',
required => '0',
},
'column_particule_size' => {
data_type => 'double',
description => 'the optional column particule size, in 'µm'',
required => '0',
},
'flow_rate' => {
data_type => 'double',
description => 'the optional separation flow rate, in 'µL/min'',
required => '0',
},
'offset' => {
data_type => 'int',
description => 'The number of items to skip before starting to collect the result set.',
required => '0',
},
'limit' => {
data_type => 'int',
description => 'The numbers of items to return.',
required => '0',
},
};
__PACKAGE__->method_documentation->{ 'get_chromatographies_properties' } = {
summary => 'Get / search chromatographies, extract queried properties.',
params => $params,
returns => 'object',
};
}
# @return object
#
sub get_chromatographies_properties {
my ($self, %args) = @_;
# verify the required parameter 'spectra_type' is set
unless (exists $args{'spectra_type'}) {
croak("Missing the required parameter 'spectra_type' when calling get_chromatographies_properties");
}
# verify the required parameter 'properties' is set
unless (exists $args{'properties'}) {
croak("Missing the required parameter 'properties' when calling get_chromatographies_properties");
}
# parse inputs
my $_resource_path = '/spectra/{spectraType}/chromatographies/{properties}';
my $_method = 'GET';
my $query_params = {};
my $header_params = {};
my $form_params = {};
# 'Accept' and 'Content-Type' header
my $_header_accept = $self->{api_client}->select_header_accept('application/json');
if ($_header_accept) {
$header_params->{'Accept'} = $_header_accept;
}
$header_params->{'Content-Type'} = $self->{api_client}->select_header_content_type();
# query params
if ( exists $args{'column_name'}) {
$query_params->{'column_name'} = $self->{api_client}->to_query_value($args{'column_name'});
}
# query params
if ( exists $args{'column_constructor'}) {
$query_params->{'column_constructor'} = $self->{api_client}->to_query_value($args{'column_constructor'});
}
# query params
if ( exists $args{'mode'}) {
$query_params->{'mode'} = $self->{api_client}->to_query_value($args{'mode'});
}
# query params
if ( exists $args{'column_length'}) {
$query_params->{'column_length'} = $self->{api_client}->to_query_value($args{'column_length'});
}
# query params
if ( exists $args{'column_diameter'}) {
$query_params->{'column_diameter'} = $self->{api_client}->to_query_value($args{'column_diameter'});
}
# query params
if ( exists $args{'column_particule_size'}) {
$query_params->{'column_particule_size'} = $self->{api_client}->to_query_value($args{'column_particule_size'});
}
# query params
if ( exists $args{'flow_rate'}) {
$query_params->{'flow_rate'} = $self->{api_client}->to_query_value($args{'flow_rate'});
}
# query params
if ( exists $args{'offset'}) {
$query_params->{'offset'} = $self->{api_client}->to_query_value($args{'offset'});
}
# query params
if ( exists $args{'limit'}) {
$query_params->{'limit'} = $self->{api_client}->to_query_value($args{'limit'});
}
# path params
if ( exists $args{'spectra_type'}) {
my $_base_variable = "{" . "spectraType" . "}";
my $_base_value = $self->{api_client}->to_path_value($args{'spectra_type'});
$_resource_path =~ s/$_base_variable/$_base_value/g;
}
# path params
if ( exists $args{'properties'}) {
my $_base_variable = "{" . "properties" . "}";
my $_base_value = $self->{api_client}->to_path_value($args{'properties'});
$_resource_path =~ s/$_base_variable/$_base_value/g;
}
my $_body_data;
# authentication setting, if any
my $auth_settings = [qw(ApiKeyToken ApiKeyAuth )];
# make the API Call
my $response = $self->{api_client}->call_api($_resource_path, $_method,
$query_params, $form_params,
$header_params, $_body_data, $auth_settings);
if (!$response) {
return;
}
my $_response_object = $self->{api_client}->deserialize('object', $response);
return $_response_object;
}
#
# get_chromatography
#
# Get a chromatography by its PeakForest ID or its InChIKey
#
# @param string $id The chromatography PeakForest ID or its code. (required)
{
my $params = {
'id' => {
data_type => 'string',
description => 'The chromatography PeakForest ID or its code.',
required => '1',
},
};
__PACKAGE__->method_documentation->{ 'get_chromatography' } = {
summary => 'Get a chromatography by its PeakForest ID or its InChIKey',
params => $params,
returns => 'Chromatography',
};
}
# @return Chromatography
#
sub get_chromatography {
my ($self, %args) = @_;
# verify the required parameter 'id' is set
unless (exists $args{'id'}) {
croak("Missing the required parameter 'id' when calling get_chromatography");
}
# parse inputs
my $_resource_path = '/chromatography/{id}';
my $_method = 'GET';
my $query_params = {};
my $header_params = {};
my $form_params = {};
# 'Accept' and 'Content-Type' header
my $_header_accept = $self->{api_client}->select_header_accept('application/json');
if ($_header_accept) {
$header_params->{'Accept'} = $_header_accept;
}
$header_params->{'Content-Type'} = $self->{api_client}->select_header_content_type();
# path params
if ( exists $args{'id'}) {
my $_base_variable = "{" . "id" . "}";
my $_base_value = $self->{api_client}->to_path_value($args{'id'});
$_resource_path =~ s/$_base_variable/$_base_value/g;
}
my $_body_data;
# authentication setting, if any
my $auth_settings = [qw(ApiKeyToken ApiKeyAuth )];
# make the API Call
my $response = $self->{api_client}->call_api($_resource_path, $_method,
$query_params, $form_params,
$header_params, $_body_data, $auth_settings);
if (!$response) {
return;
}
my $_response_object = $self->{api_client}->deserialize('Chromatography', $response);
return $_response_object;
}
1;