SemanticWeb-Schema/lib/SemanticWeb/Schema/BioChemEntity.pm
use utf8;
package SemanticWeb::Schema::BioChemEntity;
# ABSTRACT: Any biological
use v5.14;
use Moo;
extends qw/ SemanticWeb::Schema::Thing /;
use MooX::JSON_LD 'BioChemEntity';
use Ref::Util qw/ is_plain_hashref /;
# RECOMMEND PREREQ: Ref::Util::XS
use namespace::autoclean;
our $VERSION = 'v23.0.0';
has associated_disease => (
is => 'rw',
predicate => '_has_associated_disease',
json_ld => 'associatedDisease',
);
has bio_chem_interaction => (
is => 'rw',
predicate => '_has_bio_chem_interaction',
json_ld => 'bioChemInteraction',
);
has bio_chem_similarity => (
is => 'rw',
predicate => '_has_bio_chem_similarity',
json_ld => 'bioChemSimilarity',
);
has biological_role => (
is => 'rw',
predicate => '_has_biological_role',
json_ld => 'biologicalRole',
);
has funding => (
is => 'rw',
predicate => '_has_funding',
json_ld => 'funding',
);
has has_bio_chem_entity_part => (
is => 'rw',
predicate => '_has_has_bio_chem_entity_part',
json_ld => 'hasBioChemEntityPart',
);
has has_molecular_function => (
is => 'rw',
predicate => '_has_has_molecular_function',
json_ld => 'hasMolecularFunction',
);
has has_representation => (
is => 'rw',
predicate => '_has_has_representation',
json_ld => 'hasRepresentation',
);
has is_encoded_by_bio_chem_entity => (
is => 'rw',
predicate => '_has_is_encoded_by_bio_chem_entity',
json_ld => 'isEncodedByBioChemEntity',
);
has is_involved_in_biological_process => (
is => 'rw',
predicate => '_has_is_involved_in_biological_process',
json_ld => 'isInvolvedInBiologicalProcess',
);
has is_located_in_subcellular_location => (
is => 'rw',
predicate => '_has_is_located_in_subcellular_location',
json_ld => 'isLocatedInSubcellularLocation',
);
has is_part_of_bio_chem_entity => (
is => 'rw',
predicate => '_has_is_part_of_bio_chem_entity',
json_ld => 'isPartOfBioChemEntity',
);
has taxonomic_range => (
is => 'rw',
predicate => '_has_taxonomic_range',
json_ld => 'taxonomicRange',
);
1;
__END__
=pod
=encoding UTF-8
=head1 NAME
SemanticWeb::Schema::BioChemEntity - Any biological
=head1 VERSION
version v23.0.0
=head1 DESCRIPTION
Any biological, chemical, or biochemical thing. For example: a protein; a
gene; a chemical; a synthetic chemical.
=head1 ATTRIBUTES
=head2 C<associated_disease>
C<associatedDisease>
Disease associated to this BioChemEntity. Such disease can be a
MedicalCondition or a URL. If you want to add an evidence supporting the
association, please use PropertyValue.
A associated_disease should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::MedicalCondition']>
=item C<InstanceOf['SemanticWeb::Schema::PropertyValue']>
=item C<Str>
=back
=head2 C<_has_associated_disease>
A predicate for the L</associated_disease> attribute.
=head2 C<bio_chem_interaction>
C<bioChemInteraction>
A BioChemEntity that is known to interact with this item.
A bio_chem_interaction should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::BioChemEntity']>
=back
=head2 C<_has_bio_chem_interaction>
A predicate for the L</bio_chem_interaction> attribute.
=head2 C<bio_chem_similarity>
C<bioChemSimilarity>
A similar BioChemEntity, e.g., obtained by fingerprint similarity
algorithms.
A bio_chem_similarity should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::BioChemEntity']>
=back
=head2 C<_has_bio_chem_similarity>
A predicate for the L</bio_chem_similarity> attribute.
=head2 C<biological_role>
C<biologicalRole>
A role played by the BioChemEntity within a biological context.
A biological_role should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::DefinedTerm']>
=back
=head2 C<_has_biological_role>
A predicate for the L</biological_role> attribute.
=head2 C<funding>
A L<SemanticWeb::Schema::Grant> that directly or indirectly provide funding or sponsorship for this item. See also [[ownershipFundingInfo]].
A funding should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::Grant']>
=back
=head2 C<_has_funding>
A predicate for the L</funding> attribute.
=head2 C<has_bio_chem_entity_part>
C<hasBioChemEntityPart>
Indicates a BioChemEntity that (in some sense) has this BioChemEntity as a
part.
A has_bio_chem_entity_part should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::BioChemEntity']>
=back
=head2 C<_has_has_bio_chem_entity_part>
A predicate for the L</has_bio_chem_entity_part> attribute.
=head2 C<has_molecular_function>
C<hasMolecularFunction>
Molecular function performed by this BioChemEntity; please use
PropertyValue if you want to include any evidence.
A has_molecular_function should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::DefinedTerm']>
=item C<InstanceOf['SemanticWeb::Schema::PropertyValue']>
=item C<Str>
=back
=head2 C<_has_has_molecular_function>
A predicate for the L</has_molecular_function> attribute.
=head2 C<has_representation>
C<hasRepresentation>
A common representation such as a protein sequence or chemical structure
for this entity. For images use schema.org/image.
A has_representation should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::PropertyValue']>
=item C<Str>
=back
=head2 C<_has_has_representation>
A predicate for the L</has_representation> attribute.
=head2 C<is_encoded_by_bio_chem_entity>
C<isEncodedByBioChemEntity>
Another BioChemEntity encoding by this one.
A is_encoded_by_bio_chem_entity should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::Gene']>
=back
=head2 C<_has_is_encoded_by_bio_chem_entity>
A predicate for the L</is_encoded_by_bio_chem_entity> attribute.
=head2 C<is_involved_in_biological_process>
C<isInvolvedInBiologicalProcess>
Biological process this BioChemEntity is involved in; please use
PropertyValue if you want to include any evidence.
A is_involved_in_biological_process should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::DefinedTerm']>
=item C<InstanceOf['SemanticWeb::Schema::PropertyValue']>
=item C<Str>
=back
=head2 C<_has_is_involved_in_biological_process>
A predicate for the L</is_involved_in_biological_process> attribute.
=head2 C<is_located_in_subcellular_location>
C<isLocatedInSubcellularLocation>
Subcellular location where this BioChemEntity is located; please use
PropertyValue if you want to include any evidence.
A is_located_in_subcellular_location should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::DefinedTerm']>
=item C<InstanceOf['SemanticWeb::Schema::PropertyValue']>
=item C<Str>
=back
=head2 C<_has_is_located_in_subcellular_location>
A predicate for the L</is_located_in_subcellular_location> attribute.
=head2 C<is_part_of_bio_chem_entity>
C<isPartOfBioChemEntity>
Indicates a BioChemEntity that is (in some sense) a part of this
BioChemEntity.
A is_part_of_bio_chem_entity should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::BioChemEntity']>
=back
=head2 C<_has_is_part_of_bio_chem_entity>
A predicate for the L</is_part_of_bio_chem_entity> attribute.
=head2 C<taxonomic_range>
C<taxonomicRange>
The taxonomic grouping of the organism that expresses, encodes, or in some
way related to the BioChemEntity.
A taxonomic_range should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::DefinedTerm']>
=item C<InstanceOf['SemanticWeb::Schema::Taxon']>
=item C<Str>
=back
=head2 C<_has_taxonomic_range>
A predicate for the L</taxonomic_range> attribute.
=head1 SEE ALSO
L<SemanticWeb::Schema::Thing>
=head1 SOURCE
The development version is on github at L<https://github.com/robrwo/SemanticWeb-Schema>
and may be cloned from L<git://github.com/robrwo/SemanticWeb-Schema.git>
=head1 BUGS
Please report any bugs or feature requests on the bugtracker website
L<https://github.com/robrwo/SemanticWeb-Schema/issues>
When submitting a bug or request, please include a test-file or a
patch to an existing test-file that illustrates the bug or desired
feature.
=head1 AUTHOR
Robert Rothenberg <rrwo@cpan.org>
=head1 COPYRIGHT AND LICENSE
This software is Copyright (c) 2018-2023 by Robert Rothenberg.
This is free software, licensed under:
The Artistic License 2.0 (GPL Compatible)
=cut