SemanticWeb-Schema/lib/SemanticWeb/Schema/Gene.pm
use utf8;
package SemanticWeb::Schema::Gene;
# ABSTRACT: A discrete unit of inheritance which affects one or more biological traits (Source: [https://en
use v5.14;
use Moo;
extends qw/ SemanticWeb::Schema::BioChemEntity /;
use MooX::JSON_LD 'Gene';
use Ref::Util qw/ is_plain_hashref /;
# RECOMMEND PREREQ: Ref::Util::XS
use namespace::autoclean;
our $VERSION = 'v23.0.0';
has alternative_of => (
is => 'rw',
predicate => '_has_alternative_of',
json_ld => 'alternativeOf',
);
has encodes_bio_chem_entity => (
is => 'rw',
predicate => '_has_encodes_bio_chem_entity',
json_ld => 'encodesBioChemEntity',
);
has expressed_in => (
is => 'rw',
predicate => '_has_expressed_in',
json_ld => 'expressedIn',
);
has has_bio_polymer_sequence => (
is => 'rw',
predicate => '_has_has_bio_polymer_sequence',
json_ld => 'hasBioPolymerSequence',
);
1;
__END__
=pod
=encoding UTF-8
=head1 NAME
SemanticWeb::Schema::Gene - A discrete unit of inheritance which affects one or more biological traits (Source: [https://en
=head1 VERSION
version v23.0.0
=head1 DESCRIPTION
A discrete unit of inheritance which affects one or more biological traits
(Source:
[https://en.wikipedia.org/wiki/Gene](https://en.wikipedia.org/wiki/Gene)).
Examples include FOXP2 (Forkhead box protein P2), SCARNA21 (small Cajal
body-specific RNA 21), A- (agouti genotype).
=head1 ATTRIBUTES
=head2 C<alternative_of>
C<alternativeOf>
Another gene which is a variation of this one.
A alternative_of should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::Gene']>
=back
=head2 C<_has_alternative_of>
A predicate for the L</alternative_of> attribute.
=head2 C<encodes_bio_chem_entity>
C<encodesBioChemEntity>
Another BioChemEntity encoded by this one.
A encodes_bio_chem_entity should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::BioChemEntity']>
=back
=head2 C<_has_encodes_bio_chem_entity>
A predicate for the L</encodes_bio_chem_entity> attribute.
=head2 C<expressed_in>
C<expressedIn>
Tissue, organ, biological sample, etc in which activity of this gene has
been observed experimentally. For example brain, digestive system.
A expressed_in should be one of the following types:
=over
=item C<InstanceOf['SemanticWeb::Schema::AnatomicalStructure']>
=item C<InstanceOf['SemanticWeb::Schema::AnatomicalSystem']>
=item C<InstanceOf['SemanticWeb::Schema::BioChemEntity']>
=item C<InstanceOf['SemanticWeb::Schema::DefinedTerm']>
=back
=head2 C<_has_expressed_in>
A predicate for the L</expressed_in> attribute.
=head2 C<has_bio_polymer_sequence>
C<hasBioPolymerSequence>
A symbolic representation of a BioChemEntity. For example, a nucleotide
sequence of a Gene or an amino acid sequence of a Protein.
A has_bio_polymer_sequence should be one of the following types:
=over
=item C<Str>
=back
=head2 C<_has_has_bio_polymer_sequence>
A predicate for the L</has_bio_polymer_sequence> attribute.
=head1 SEE ALSO
L<SemanticWeb::Schema::BioChemEntity>
=head1 SOURCE
The development version is on github at L<https://github.com/robrwo/SemanticWeb-Schema>
and may be cloned from L<git://github.com/robrwo/SemanticWeb-Schema.git>
=head1 BUGS
Please report any bugs or feature requests on the bugtracker website
L<https://github.com/robrwo/SemanticWeb-Schema/issues>
When submitting a bug or request, please include a test-file or a
patch to an existing test-file that illustrates the bug or desired
feature.
=head1 AUTHOR
Robert Rothenberg <rrwo@cpan.org>
=head1 COPYRIGHT AND LICENSE
This software is Copyright (c) 2018-2023 by Robert Rothenberg.
This is free software, licensed under:
The Artistic License 2.0 (GPL Compatible)
=cut